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Reconstruction and Characterization of Full-Length Begomovirus and Alphasatellite Genomes Infecting Pepper through Metagenomics.

Abstract:

:In northwestern Argentina (NWA), pepper crops are threatened by the emergence of begomoviruses due to the spread of its vector, Bemisia tabaci (Gennadius). The genus Begomovirus includes pathogens that can have a monopartite or bipartite genome and are occasionally associated with sub-viral particles called satellites. This study characterized the diversity of begomovirus and alphasatellite species infecting pepper in NWA using a metagenomic approach. Using RCA-NGS (rolling circle amplification-next generation sequencing), 19 full-length begomovirus genomes (DNA-A and DNA-B) and one alphasatellite were assembled. This ecogenomic approach revealed six begomoviruses in single infections: soybean blistering mosaic virus (SbBMV), tomato yellow spot virus (ToYSV), tomato yellow vein streak virus (ToYVSV), tomato dwarf leaf virus (ToDfLV), sida golden mosaic Brazil virus (SiGMBRV), and a new proposed species, named pepper blistering leaf virus (PepBLV). SbBMV was the most frequently detected species, followed by ToYSV. Moreover, a new alphasatellite associated with ToYSV, named tomato yellow spot alphasatellite 2 (ToYSA-2), was reported for the first time in Argentina. For the Americas, this was the first report of an alphasatellite found in a crop (pepper) and in a weed (Leonurus japonicus). We also detected intra-species and inter-species recombination.

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Viruses-Basel

VIRUSES-BASEL

最新影响因子：5.048	期刊ISSN：1999-4915	CiteScore：
出版周期：	是否OA：YES	出版年份：2009

期刊官方网址：http://www.mdpi.com/journal/viruses

期刊投稿地址：http://susy.mdpi.com/

自引率：5.80%	研究方向：VIROLOGY-
出版地区：SWITZERLAND

SCI期刊coverage：Science Citation Index Expanded（科学引文索引扩展）

NCBI查询：PubMed Central (PMC)链接全文检索(pubmed central)

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Viruses-Basel 期刊简介

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Aims Viruses (ISSN 1999-4915) is an open access journal which provides an advanced forum for studies of viruses. It publishes reviews, regular research papers, communications, conference reports and short notes. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. We also encourage the publication of timely reviews and commentaries on topics of interest to the virology community and feature highlights from the virology literature in the ''News and Views'' section. Electronic files or software regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material Subject Areas virus, viruses, virion, virology, virological, viral, viral infections, virologist virus classification virus-like agents, viroids, prions bacteriophage viral epidemiology vaccines, viral immunology antiviral drugs, antiviral therapy, antiviral drug development origin of viruses, viral evolution virus structures, genomes virus dynamics, mathematical and simulation models of virus infections Viruses (ISSN 1999-4915; CODEN: VIRUBR) is an open access journal of virology published monthly online by MDPI.Open Access - free for readers, with publishing fees paid by authors or their institutions. High visibility: indexed by the Science Citation Index Expanded (Web of Science), MEDLINE (PubMed) and other databases. Full-text available in PubMed Central. Rapid publication: manuscripts are peer-reviewed and a first decision provided to authors approximately 36 days after submission; acceptance to publication is undertaken in 8 days (median values for papers published in this journal in 2015). Editorial Section highlighting important developments to a broad audience of virologists and written by leading experts in the field.

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目标病毒（ISSN 1999-4915）是一个开放获取期刊，为病毒研究提供了一个高级论坛。它出版评论，定期研究论文，通讯，会议报告和简短笔记。我们的目标是鼓励科学家尽可能详细地公布他们的实验和理论结果，论文的篇幅没有限制，必须提供完整的实验细节，以便重现结果。我们还鼓励出版关于病毒学界感兴趣的主题的及时评论和评论，并在“新闻和观点”部分中提供病毒学文献的重点。关于计算和实验程序的全部细节的电子文件或软件，如果无法以正常方式发布，可以作为补充材料存放学科领域病毒，病毒，病毒，病毒学，病毒学，病毒，病毒感染，病毒学家病毒分类类病毒制剂，类病毒，朊病毒噬菌体病毒流行病学疫苗，病毒免疫学抗病毒药物，抗病毒治疗，抗病毒药物开发病毒起源，病毒进化病毒结构，基因组病毒动力学、数学模型和病毒感染模拟模型病毒（ISSN 1999-4915；coden:virubr）是MDPI每月在线出版的开放存取病毒学期刊。开放存取：读者免费，出版费用由作者或其机构支付。高可视性：通过科学引文索引扩展（科学网）、医学在线（PubMed）和其他数据库进行索引。PubMed Central提供全文。快速出版：稿件经过同行评审，并在提交后约36天向作者提供第一个决定；在8天内接受出版（2015年本杂志发表论文的中值）。社论部分强调了病毒学家的重要发展，并由该领域的主要专家撰写。

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动物病毒 (1) 病毒学 (1) 分子病毒学 (1) 水产动物病毒学 (1) 病毒 (1)
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医学	VIROLOGY(病毒学) 3区	11/35

年度总发文量	年度论文发表量	年度综述发表量
385	227	158

Reconstruction and Characterization of Full-Length Begomovirus and Alphasatellite Genomes Infecting Pepper through Metagenomics.

Viruses-Basel

VIRUSES-BASEL

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Reconstruction and Characterization of Full-Length Begomovirus and Alphasatellite Genomes Infecting Pepper through Metagenomics.

Viruses-Basel

VIRUSES-BASEL

Viruses-Basel 期刊简介

英文简介：

中文简介：（来自Google、百度翻译）

Viruses-Basel 期刊中科院评价数据

最新中科院分区

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刊物信息可查

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